Index

A

ActivityData (class in sgrna_modeler.datasets)

B

build_kim2018() (in module sgrna_modeler.models), [1]

C

curr_path() (in module sgrna_modeler.datasets) (in module sgrna_modeler.models)

E

encode_seqs() (in module sgrna_modeler.features)

F

featurize_guides() (in module sgrna_modeler.features)

fit() (sgrna_modeler.models.KerasSgrnaModel method) (sgrna_modeler.models.SklearnSgrnaModel method)

G

generate_variants() (in module sgrna_modeler.mutagenesis) get_context_order() (in module sgrna_modeler.features) get_deepcpf1_weights() (in module sgrna_modeler.models) get_double_zipper() (in module sgrna_modeler.features) get_enpam_gb() (in module sgrna_modeler.models) get_frac_g_or_c() (in module sgrna_modeler.features) get_guide_sequence() (in module sgrna_modeler.features) get_one_nt_counts() (in module sgrna_modeler.features) get_one_nt_pos() (in module sgrna_modeler.features)

get_physiochemical() (in module sgrna_modeler.features) get_rep_counts() (in module sgrna_modeler.features) get_thermo() (in module sgrna_modeler.features) get_three_nt_counts() (in module sgrna_modeler.features) get_three_nt_pos() (in module sgrna_modeler.features) get_two_nt_counts() (in module sgrna_modeler.features) get_two_nt_pos() (in module sgrna_modeler.features) get_xy() (sgrna_modeler.datasets.ActivityData method) get_zipper_counts() (in module sgrna_modeler.features) get_zipper_pos() (in module sgrna_modeler.features)

K

KerasSgrnaModel (class in sgrna_modeler.models)

L

load_doench_2016() (in module sgrna_modeler.datasets) load_kim_2018_test() (in module sgrna_modeler.datasets) load_kim_2018_train() (in module sgrna_modeler.datasets) load_kim_2019_test() (in module sgrna_modeler.datasets)

load_kim_2019_train() (in module sgrna_modeler.datasets) load_meyers_2017_test() (in module sgrna_modeler.datasets) load_meyers_2017_train() (in module sgrna_modeler.datasets) load_model() (sgrna_modeler.models.SklearnSgrnaModel method) load_weights() (sgrna_modeler.models.KerasSgrnaModel method)

M

mutagenize_model() (in module sgrna_modeler.mutagenesis)

mutagenize_seq() (in module sgrna_modeler.mutagenesis)

P

predict() (sgrna_modeler.models.KerasSgrnaModel method) (sgrna_modeler.models.SklearnSgrnaModel method)

predict_seqs() (sgrna_modeler.models.KerasSgrnaModel method) (sgrna_modeler.models.SklearnSgrnaModel method)

S

sgrna_modeler (module) sgrna_modeler.datasets (module) sgrna_modeler.enzymes (module)

sgrna_modeler.features (module) sgrna_modeler.models (module) sgrna_modeler.mutagenesis (module) SklearnSgrnaModel (class in sgrna_modeler.models), [1]